Publications

More Publications

(2019). Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters. Genome Bio.

PDF Code Project Source Document

(2019). STing: accurate and ultrafast genomic profiling with exact sequence matches. BioRxiv.

Preprint PDF Code Project

(2019). Genomic characterization and computational phenotyping of nitrogen-fixing bacteria isolated from Colombian sugarcane fields. BioRxiv.

Preprint PDF Source Document

(2019). Differences Among Luminal and Mucosal Microbiota Among Fecal Microbiota Transplant Recipients. MRA.

PDF Project Source Document

(2019). Differences Among Luminal and Mucosal Microbiota Among Fecal Microbiota Transplant Recipients. J. Gastro.

PDF

Projects

GADGET

Global Distribtion of Genetic Traits - is a visual platform for exploring the genetic basis of human phenotypic diversity

ChocoGEN

Genetic ancestry and health in the Colombian Pacific

Vibriocholera.com

Prediction of Type VI Secretion Systems in Vibrio cholerae

rampdb

A central repository for: (1) Exploring known information regarding RAMPs, GPCRs and associated ligands; (2) Predicting potential RAMP interactions with your sequence or ligand; (3) Visualizing currently known interactions between RAMPs, GPCRs and ligands

Teaching

I help design and teach the MS Bioinformatics capstone classes at Georgia Tech

  • BIOL7200 Programming for Bioinformatics
  • BIOL7210 Computational Genomics

I also help design and deliver 40+ 2- and 4-day workforce development courses. More information about these courses can be found on the Applied Bioinformatics Laboratory’s website.

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