Publications

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Nagar, S.D., Conley, A.B., Chande, A.T., Rishishwar, L., Sharma, S., Mariño-Ramírez, L., Aguinaga-Romero, G., Jordan, I.K., Gallo, J.E.. Genetic ancestry and ethnic identity in Ecuador. Front. Genet., 2021.

Source Document

Im, S.B., Gupta, S., Jain, M., Chande, A.T., Carleton, H.A., Jordan, I.K., Rishishwar, L.. The Impact of Ethnicity and Genetic Ancestry on Disease Prevalence and Risk in Colombia. Front. Sustain. Food Syst., 2021.

Source Document

Chande, A.T., Nagar, S.D., Rishishwar, L., Mariño-Ramírez, L., Medina-Rivas, M.A., Valderrama-Aguirre, A., Jordan, I.K., Gallo, J.E.. The Impact of Ethnicity and Genetic Ancestry on Disease Prevalence and Risk in Colombia. Front. Genet., 2021.

Source Document

Medina-Cordoba, L.K., Chande, A.T., Rishishwar, L., Mayer, L.W., Valderrama-Aguirre, L.C., Valderrama-Aguirre, A., Gaby, J.C., Kostka, J.E., Jordan, I.K.. Genomic characterization and computational phenotyping of nitrogen-fixing bacteria isolated from Colombian sugarcane fields. Sci rep, 2021.

Preprint Source Document

Chande, A.T., Lee, S., Harris, M., Nguyen, Q., Beckett, S.J., Hilley, T., Andris, C., Weitz, J.S.. Real-time, interactive website for US-county-level COVID-19 event risk assessment. Nat Hum Behav, 2020.

PDF Code Project

Weitz, J.S., Harris, M., Chande, A.T., Rishishwar, L., Jordan, I.K.. Online COVID-19 Dashboard Calculates How Risky Reopenings and Gatherings Can Be. Sci Am, 2020.

Project Source Document

Chande, A.T., Rishishwar, L., Ban, D., Nagar, S.D., Conley, A.B., Rowell, J., Valderrama-Aguirre, A., Medina-Rivas, M.A., Jordan, I.K.. Ancestry effects on type 2 diabetes genetic risk inference in Hispanic/Latino populations.. GBE, 2020.

Chande, A.T., Rishishwar, L., Conley, A.B., Valderrama-Aguirre, A., Medina-Rivas, M.A., Jordan, I.K.. Ancestry effects on type 2 diabetes genetic risk inference in Hispanic/Latino populations.. BMC Med Genet, 2020.

Norris, E.T., Rishishwar, L., Chande, A.T., Conley, A.B., Ye, K., Valderrama-Aguirre, A., Jordan, I.K.. Admixture-enabled selection for rapid adaptive evolution in the Americas. Genome Biology, 2020.

Project Source Document

Crisan, C.V., Chande, A.T., Williams, K., Raghuram, V., Rishishwar, L., Steinbach, G., Watve, S.S., Yunker, P., Jordan, I.K., Hammer, B.K.. Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters. Genome Bio, 2019.

PDF Code Project Source Document

Espitia, H., Chande, A.T., Nagar, S.D., Smith H., Jordan, I.K., Rishishwar, L.. STing: accurate and ultrafast genomic profiling with exact sequence matches. NAR, 2019.

Preprint PDF Code Project Source Document

Haydek, J.P., Rishishwar, L., Chande, A.T., Jordan, I.K., Tom, J., Neish, E., Ward, A., Woodworth, M.H., Neish, A.S., Dhere, T.A., Kraft, C.. Differences Among Luminal and Mucosal Microbiota Among Fecal Microbiota Transplant Recipients. J. Gastro, 2019.

Bernardy, E.E., Petit, R.A., Moller, A.G., Blumenthal, J.A., McAdam, A.J., Priebe, G.P., Chande, A.T., Rishishwar, L., Jordan, I.K., Read, T.D., Goldberg, J.N. Differences Among Luminal and Mucosal Microbiota Among Fecal Microbiota Transplant Recipients. MRA, 2019.

PDF Project Source Document

Dale, R., Gruning, B., Sjodin, A., Rowe, J., Chapman, B. A., Tomkins-Tinch, C. H., … Chande, A. T… ., Köster, J. Bioconda: A sustainable and comprehensive software distribution for the life sciences. NatMeth, 2018.

Preprint Project

Chande, A.T., Wang, L., Rishishwar, L., Conley, A.B., Norris, E.T., Valderrama-Aguirre, A., Jordan, I.K.. GlobAl Distribution of GEnetic Traits (GADGET) web server: polygenic trait scores worldwide. NAR, 2018.

PDF Project Source Document

Cho, C., Chande, A.T., Gakhar, L., Hunt, J., Ketterer, M. R., Apicella, M. A.. Characterization of a nontypeable Haemophilus influenzae Thermonuclease. PONE, 2018.

PDF Source Document

Medina-Cordoba, L.K., Chande, A.T, Rishishwar, L., Mayer, L.W., Mariño-Ramírez, L., Valderrama-Aguirre, L., Valderrama-Aguirre, A., Kostka, J.E, Jordan, I.K.. Genome sequences of 15 Klebsiella spp. isolates from sugarcane fields in Colombia’s Cauca Valley. GenomeA, 2018.

PDF Dataset Project Source Document

Chande, A.T., Rowell, J., Rishishwar, L., Conley, A.B., Norris, E.T., Valderrama-Aguirre, A., Medina-Rivas, M., Jordan, I.K.. Influence of genetic ancestry and socioeconomic status on type 2 diabetes in the diverse Colombian populations of Chocó and Antioquia. SciRep, 2017.

PDF Project Source Document

Post, D. M. B., Slütter, B., Schilling, B., Chande, A. T., Rasmussen, J. A., Jones, B. D., D’Souza, A. K., Reinders, L. M., Harty, J. T., Gibson, B. W., Apicella, M. A.. Characterization of Inner and Outer Membrane Proteins from Francisella tularensis Strains LVS and Schu S4 and Identification of Potential Subunit Vaccine Candidates. mBio, 2017.

PDF Source Document

Norris, E.T., Rishishwar, L., Wang, L., Conley, A.B., Chande, A.T., Dabrowski, A.M., Valderrama-Aguirre, A., Jordan, I.K.. Assortative mating on ancestry-variant traits in admixed Latin American populations. BioRxiv, 2017.

Preprint PDF Project

Post, D.M.B., Schilling, B., Reinders, L. M., DaSouza, A. K., Ketterer, M. R., Kiel, S. J., Chande, A. T., Apicella, M. A., Gibson, B. W. Identification and characterization of AckA-dependent protein acetylation in Neisseria gonorrhoeae. PLOS One, 2017.

PDF Source Document

Topaz, N., Mojib, N., Chande, A. T., Kubanek, J., Jordan, I. K.. RampDB: a web application and database for the exploration and prediction of receptor activity modifying protein interactions. Database, 2017.

PDF Project Source Document

Espitia, H, Chande, A. T., Jordan, I. K., Rishishwar, L.. Method of sequence typing with in silico aptamers from a Next Generation Sequencing platform. 2017.

Watve, S. S., Chande, A. T., Rishishwar, L., Mariño-RamÃŋrez, L., Jordan, I. K., Hammer, B. K.. Whole-Genome Sequences of 26 Vibrio cholerae Isolates. GenomeA, 2016.

PDF Dataset Project Source Document

Wozniak, J.E., Chande, A.T., Burd, E.M., Band, V.I., Satola, S.W., Farley, M.M., Jacod, J.T., Jordan, I. K., Weiss, D.S.. Absence of mgrB Alleviates Negative Growth Effects of Colistin Resistance in Enterobacter cloacae. Antibiotics, 2016.

Source Document

Cho, C., Chande, A., Gakhar, L., Bakaletz, L. O., Jurcisek, J. A., Ketterer, M, Shao, J., Gotoh, K., Foster, E., Hunt, J., O’Brien, E., Apicella, M. A.. Role of the nuclease of nontypeable Haemophilus influenzae in dispersal of organisms from biofilms. Infect. Immun., 2014.

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